$ java -jar ConvexCount.jar -list -k 3 < spectrum2.txt // Taxa in tree: 11 // Only considering convex characters where each state has at least 3 taxa. // Total characters = 8 // Generating all the characters! 1: {{1,2,3},{4,5,6},{7,8,9,10,11}} 2: {{1,2,3,4,5,6},{7,8,9,10,11}} 3: {{1,2,7,8},{3,4,5,6},{9,10,11}} 4: {{1,2,7,8,9,10,11},{3,4,5,6}} 5: {{1,2,3,7,8},{4,5,6},{9,10,11}} 6: {{1,2,3,4,5,6,7,8},{9,10,11}} 7: {{1,2,3,7,8,9,10,11},{4,5,6}} 8: {{1,2,3,4,5,6,7,8,9,10,11}} $ java -jar ConvexCount.jar -list -k 4 < spectrum2.txt // Taxa in tree: 11 // Only considering convex characters where each state has at least 4 taxa. // Total characters = 3 // Generating all the characters! 1: {{1,2,3,4,5,6},{7,8,9,10,11}} 2: {{1,2,7,8,9,10,11},{3,4,5,6}} 3: {{1,2,3,4,5,6,7,8,9,10,11}} $ java -jar ConvexCount.jar -list -k 5 < spectrum2.txt // Taxa in tree: 11 // Only considering convex characters where each state has at least 5 taxa. // Total characters = 2 // Generating all the characters! 1: {{1,2,3,4,5,6},{7,8,9,10,11}} 2: {{1,2,3,4,5,6,7,8,9,10,11}}